Phase 10: Operate

QuickBooks vs FreshBooks vs Wave: Best Accounting Software for Real Estate Brokerages

7 min read·Updated April 2025

Launching your own real estate brokerage means more than just agent recruitment. Your accounting software will handle commission splits, trust accounts, and broker-specific expenses. Choosing the right tool — QuickBooks, FreshBooks, or Wave — now prevents a huge headache later for your real estate firm.

READY TO TAKE ACTION?

Use the free LaunchAdvisor checklist to track every step in this guide.

Open Free Checklist →

The quick answer

Use QuickBooks if your brokerage has multiple agents, needs to track complex commission splits, manages trust accounts, or has W2 employees (like admin staff). Use FreshBooks if you are a solo agent or small team mainly needing invoicing for client-direct services like property management or consulting. Use Wave if you are just starting your brokerage and need free double-entry accounting for initial expenses before significant transaction volume.

Side-by-side breakdown

QuickBooks Online is the most complete accounting platform for real estate brokerages. It handles agent commission tracking (Gross Commission Income, net commission), operational expenses (MLS fees, E&O insurance, CRM subscriptions), bank reconciliation, and detailed P&L reports. It’s essential for managing separate trust accounts (escrow) and preparing 1099 forms for agents. Most real estate accountants prefer it. Starts at $30-$50/month, depending on features needed for multiple agents.

FreshBooks is built for individual real estate agents or small teams offering direct services, like property management or consulting. Its invoicing is polished for billing clients a percentage fee (e.g., 8-12% property management fee on rent) or hourly rates for consulting. Its time tracking helps if you bill by the hour. It is less suited for complex brokerage commission structures or trust accounting. Starts around $17-$30/month.

Wave is free accounting software for new, very small real estate businesses. It covers income, expenses, and basic invoicing. It's good for tracking initial costs like state licensing fees ($100-$500), local board memberships ($500-$1500 annually), and early marketing. Payroll and payment processing are paid add-ons. It is capable for simple accounting but lacks the integrations and robust features needed for growing brokerages or trust accounts.

When to choose QuickBooks

QuickBooks is the right choice when your real estate brokerage has complexity that basic tools cannot handle. This includes managing multiple agents (e.g., 5+ agents), varying commission splits (e.g., 70/30, 80/20, or tiered systems), mandatory trust (escrow) accounts, or W2 employees (admin, marketing staff) requiring payroll. If you plan to scale, handle many transactions (e.g., 20+ closings per month), or work with an industry-specific real estate accountant, QuickBooks is the standard. It tracks agent draw accounts, referral fees, and detailed profit/loss per office location.

When to choose FreshBooks

FreshBooks wins for independent real estate agents or small teams focused on services directly billed to clients, not primarily commission-based transactions. For example, a property manager invoicing landlords for monthly fees (often 8-12% of rent) or maintenance. It’s also useful for a real estate consultant who bills clients hourly for market analysis or property search assistance. If you bill clients by the hour or by project for these types of services and want to see margin per client without complex reports, FreshBooks is purpose-built for that.

When to choose Wave

Wave is the right starting point for pre-revenue brokerages, solo agents converting to broker-owner, or founders who need to track income and expenses without spending on software. Use it to log initial setup costs like broker licensing fees, National Association of REALTORS® dues ($150-$200), local board fees ($300-$500), MLS access fees ($50-$100/month), and basic office supplies. Once you have multiple agents, regular transaction volume (e.g., 3+ closings per month), or a bookkeeper who needs QuickBooks, plan to migrate.

The verdict

Growing real estate brokerage with multiple agents, complex commissions, or trust accounts: QuickBooks. Individual agent or small team invoicing clients directly for services: FreshBooks. Early-stage or pre-revenue brokerage tracking initial expenses: Wave. Most successful real estate brokerages will eventually need QuickBooks for robust commission tracking, trust accounting, and scalability. Migrating earlier is easier than migrating later.

How to get started

If you’re just getting your broker’s license and opening your doors, start with Wave to log initial expenses like state license applications, E&O insurance premiums ($1,000-$2,000 annually), and basic marketing. As soon as you hire your first admin staff (W2 employee) or onboard a few 1099 agents and start having regular closings (e.g., 3+ per month), switch to QuickBooks. Immediately connect your dedicated brokerage bank accounts and reconcile monthly. This habit will expose issues quickly, especially with commission payouts and trust account balancing. Your first tax season, especially when filing 1099-NEC forms for your agents, will tell you everything about whether your accounting setup is working.

RECOMMENDED TOOLS

QuickBooks Online

The industry-standard small business accounting platform

Most Used

FreshBooks

Invoicing and project profitability for service businesses

Best for Services

Wave

Free double-entry accounting for small businesses

Free

Some links above are affiliate links. We may earn a commission if you sign up — at no extra cost to you.

FREQUENTLY ASKED QUESTIONS

Can I use Wave and then switch to QuickBooks?

Yes, but the migration requires exporting data and re-entering or importing into QuickBooks. Do it before your first tax year ends so you have clean records. Many bookkeepers charge a fixed fee to handle the migration.

Do I need a bookkeeper if I use accounting software?

Accounting software records transactions. A bookkeeper reconciles, categorizes, and ensures the records are accurate. For businesses with significant revenue, a part-time bookkeeper saves more than their cost in avoided errors and tax savings.

What is the difference between accounting software and invoicing software?

Invoicing software creates and tracks invoices but does not do double-entry bookkeeping. Accounting software maintains a general ledger, income statement, and balance sheet. You need accounting software, not just invoicing, for tax compliance.

Apply This in Your Checklist

Phase 10.8Get a business line of credit and plan your finances

Related Guides

Operate

Gusto vs QuickBooks Payroll vs ADP: Best Payroll for Small Business

Operate

Bootstrapping vs Business Credit vs Investors: How to Fund Your Growth

Operate

Stripe vs Square vs PayPal: Best Payment Processor for Small Business